Package: PAC
Type: Package
Title: Partition-Assisted Clustering and Multiple Alignments of
        Networks
Version: 1.1.6
Date: 2025-12-15
Authors@R: c(person(given = c("Ye", "Henry"),
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "hlowl2@gmail.com"),
             person(given = "Dangna",
                    family = "Li",
                    role = "aut"))
Description: Implements partition-assisted clustering and multiple
        alignments of networks. It 1) utilizes partition-assisted
        clustering to find robust and accurate clusters and 2)
        discovers coherent relationships of clusters across multiple
        samples. It is particularly useful for analyzing single-cell
        data set. Please see Li et al. (2017)
        <doi:10.1371/journal.pcbi.1005875> for detail method
        description.
URL: https://doi.org/10.1371/journal.pcbi.1005875
License: GPL-3
Imports: Rcpp (>= 0.12.2), igraph, parmigene, infotheo, dplyr, Rtsne,
        ggplot2, ggrepel
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
LinkingTo: Rcpp
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2026-09-22 11:23:53 UTC; root
Author: Ye Henry Li [aut, cre], Dangna Li [aut]
Maintainer: Ye Henry Li <hlowl2@gmail.com>
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://yhenryli.r-universe.dev
Date/Publication: 2025-12-15 23:10:02 UTC
RemoteUrl: https://github.com/cran/PAC
RemoteRef: HEAD
RemoteSha: e96ecb7a0e2ac77afbbbe03e7c238268c5d8c1b6